API reference

GlycolysisPentosePathwayPhaseMap.explore — Function

explore(; grid = default_atp_grid())
explore(grid::AbstractString)

Open the interactive GLMakie explorer over a cached 3-D ATP×NADPH×R5P grid CSV (defaults to the one shipped in data/). Click heatmap cells and drag the ATP-demand slider to re-slice the cached grid — no ODE solve. Blocks until the window is closed.

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GlycolysisPentosePathwayPhaseMap.phasemap — Function

phasemap(; grid = default_demand_grid(), save = nothing,
           reps = nothing, size = (1500, 850)) -> Figure

Render the static Layout-A phase map (cycle-index heatmap + a representative cycle and reverse flux schematic) from a 2-D demand grid CSV (defaults to the one shipped in data/). Renders with CairoMakie; writes a PNG when save is a path. reps defaults to the cycle corner (hi NADPH / lo R5P) and the reverse corner (lo NADPH / hi R5P).

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GlycolysisPentosePathwayPhaseMap.regenerate_grid — Function

regenerate_grid(; kwargs...)

Recompute the shipped grid CSVs by solving the kinetic ODE model. Only available when the recompute extension is active — load it first with using PentosePhosphatePathway.

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